A B C D E F G H I K L M N O P Q R S T U V W

A

addEdge(BNNode, BNNode) - Method in class edu.uct.ibr.bayesnet.BNGraph

Add an edge between the src and dest nodes.

addImplicationStatement(Implication) - Method in class edu.uct.ibr.bayesnet.BNGraph

Add an implication statement to the knowledge base and modify the graph correctly

ANCESTOR - edu.uct.ibr.bayesnet.BNNode.Relationship

autoLayouter - Variable in class edu.uct.ibr.gui.IBRGraphPanel

B

bifConverter(BNGraph) - Static method in class edu.uct.ibr.util.ibifFactory

Converts a graph into a .bif string

BNGraph - Class in edu.uct.ibr.bayesnet

BNGraph(BBNGraph) - Constructor for class edu.uct.ibr.bayesnet.BNGraph

BNGraph(String) - Constructor for class edu.uct.ibr.bayesnet.BNGraph

BNInference - Class in edu.uct.ibr.bayesnet

TODO: Extend to allow for other algorithms Do this by having a static variable that determins what algorithm type to use.

BNInference() - Constructor for class edu.uct.ibr.bayesnet.BNInference

BNNode - Class in edu.uct.ibr.bayesnet

BNNode(BBNNode) - Constructor for class edu.uct.ibr.bayesnet.BNNode

BNNode(BNGraph, String) - Constructor for class edu.uct.ibr.bayesnet.BNNode

BNNode.Relationship - Enum in edu.uct.ibr.bayesnet

C

changeToNormalState() - Method in class edu.uct.ibr.gui.IBRGraphPanel

CHILD - edu.uct.ibr.bayesnet.BNNode.Relationship

ClassicalImplication - Class in edu.uct.ibr.implication

ClassicalImplication(BNNode, BNNode, BNGraph) - Constructor for class edu.uct.ibr.implication.ClassicalImplication

CLI_HEADER - Static variable in class edu.uct.ibr.util.message

CLI_OBSERVATION_TYPE - Static variable in class edu.uct.ibr.util.message

createGraph(ArrayList<Implication>) - Static method in class edu.uct.ibr.util.GraphUtil

createKBfromStr(String) - Static method in class edu.uct.ibr.util.ibifFactory

Create a knowledgebase of implications from a string.

D

decisionVarState - Variable in class edu.uct.ibr.gui.IBRGraphPanel

defaultLayout() - Method in class edu.uct.ibr.gui.IBRGraphPanel

defaultLayouter - Variable in class edu.uct.ibr.gui.IBRGraphPanel

DESCENDANT - edu.uct.ibr.bayesnet.BNNode.Relationship

E

edgePainterFactory - Variable in class edu.uct.ibr.gui.IBRGraphPanel

edgeState - Variable in class edu.uct.ibr.gui.IBRGraphPanel

edu.uct.ibr - package edu.uct.ibr

edu.uct.ibr.bayesnet - package edu.uct.ibr.bayesnet

edu.uct.ibr.cli - package edu.uct.ibr.cli

edu.uct.ibr.gui - package edu.uct.ibr.gui

edu.uct.ibr.implication - package edu.uct.ibr.implication

edu.uct.ibr.util - package edu.uct.ibr.util

Entailment - Class in edu.uct.ibr.util

Entailment() - Constructor for class edu.uct.ibr.util.Entailment

entails(ArrayList<Implication>, ArrayList<Implication>) - Static method in class edu.uct.ibr.util.Entailment

Check if the observations are entailed by the observations

equals(BNNode) - Method in class edu.uct.ibr.bayesnet.BNNode

equals(Object) - Method in class edu.uct.ibr.bayesnet.BNNode

ERROR_BAD_FILE_PATH - Static variable in class edu.uct.ibr.util.message

ERROR_BAD_INPUT - Static variable in class edu.uct.ibr.util.message

ERROR_BAD_NODE_NAME - Static variable in class edu.uct.ibr.util.message

ERROR_NO_GRAPH - Static variable in class edu.uct.ibr.util.message

ERROR_RELATIONSHIP_SELF - Static variable in class edu.uct.ibr.util.message

F

fileReader(String) - Static method in class edu.uct.ibr.util.ibifFactory

reads a string from a file

fileWriter(String, String) - Static method in class edu.uct.ibr.util.ibifFactory

writes a string to a file

G

getAncestors() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the ancestors of this node (does not include parents)

getAntecedentNode() - Method in class edu.uct.ibr.implication.Implication

Get the implication antecedent node

getBBNGraph() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get this BBNGraph

getBIFfromIBIF(String) - Static method in class edu.uct.ibr.util.ibifFactory

Get the .bif section of an ibif file

getBotBBNGraph() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the bot BBNGraph

getChildren() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the children of this node

getConditionalProbabilities(Hashtable<String[], Hashtable<String, String>>) - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the probability table, given a hashtable of observations

getConnectedClassicalImplications(ArrayList<Implication>) - Static method in class edu.uct.ibr.util.ImplicationUtil

getConsequentNode() - Method in class edu.uct.ibr.implication.Implication

Get the implication consequent node

getCPF() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the CPT of this table

getDescendants() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the descendants of this node (does not include children)

getFalseValueName() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the false value name of this node

getGraphNodes() - Method in class edu.uct.ibr.bayesnet.BNGraph

get a set of all the nodes in the graph

getGraphOutput() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get a toString of this graph

getKBfromIBIF(String) - Static method in class edu.uct.ibr.util.ibifFactory

Get a the knowledge base section of an .ibif

getKnowledgebase() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the knowledge base

getKnowledgebaseOutput() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the knowledgebase as a set of strings

getLogicalObservations() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get all logical observations made on the IBN

getMarginals(BNGraph) - Static method in class edu.uct.ibr.bayesnet.BNInference

Get the prior/ posterior Marginals by using Variable Elimination

getMarginalsOutput(BNGraph) - Static method in class edu.uct.ibr.bayesnet.BNInference

Get the prior/ posterior Marginals as a String, used for output

getName() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the name of this graph

getName() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the name of this name

getNode() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the BBNNode

getNode(String) - Method in class edu.uct.ibr.bayesnet.BNGraph

Get a node in the graph

getNodeNames() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the names of the nodes in this network

getNodeOutputs() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the output names for all the nodes in this network

getObservations() - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the probabilistic observations make on this network

getObservedValue() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the observed value name of this node

getParents() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the parents of this node

getPossibleValues() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the possible values this node can take

getPossibleValuesOutput() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the possible values this node can take as a string

getRelationship() - Method in class edu.uct.ibr.implication.Implication

Get the relationship of this implication

getRelationship(BNNode, BNNode) - Method in class edu.uct.ibr.bayesnet.BNGraph

Get the relationship between the two nodes.

getStronglyConnectedSet(List<Set<String>>) - Static method in class edu.uct.ibr.util.ImplicationUtil

getStronglyConnectedSets(DefaultDirectedGraph) - Static method in class edu.uct.ibr.util.ImplicationUtil

getTruthValueName() - Method in class edu.uct.ibr.bayesnet.BNNode

Get the truth value name of this node

graph - Variable in class edu.uct.ibr.gui.IBRMainPanel

graphPanel - Variable in class edu.uct.ibr.gui.IBRGraphPanel

graphPanel - Variable in class edu.uct.ibr.gui.IBRMainPanel

GraphUtil - Class in edu.uct.ibr.util

GraphUtil() - Constructor for class edu.uct.ibr.util.GraphUtil

GUI_HELP - Static variable in class edu.uct.ibr.util.message

H

hasClassicalCycle(ArrayList<Implication>) - Static method in class edu.uct.ibr.util.ImplicationUtil

hasClassicalCycle(ArrayList<Implication>, Implication) - Static method in class edu.uct.ibr.util.ImplicationUtil

hashCode() - Method in class edu.uct.ibr.bayesnet.BNNode

help() - Static method in class edu.uct.ibr.IBR

I

ibifConverter(BNGraph) - Static method in class edu.uct.ibr.util.ibifFactory

Converts a graph with a KB into an .ibif string

ibifFactory - Class in edu.uct.ibr.util

ibifFactory() - Constructor for class edu.uct.ibr.util.ibifFactory

IBR - Class in edu.uct.ibr

IBR() - Constructor for class edu.uct.ibr.IBR

IBRCLI - Class in edu.uct.ibr.cli

IBRCLI() - Constructor for class edu.uct.ibr.cli.IBRCLI

IBRGraphPanel - Class in edu.uct.ibr.gui

IBRGraphPanel() - Constructor for class edu.uct.ibr.gui.IBRGraphPanel

IBRGUI - Class in edu.uct.ibr.gui

IBRGUI() - Constructor for class edu.uct.ibr.gui.IBRGUI

IBRImplicationPanel - Class in edu.uct.ibr.gui

IBRImplicationPanel(BNGraph) - Constructor for class edu.uct.ibr.gui.IBRImplicationPanel

IBRMainPanel - Class in edu.uct.ibr.gui

IBRMainPanel() - Constructor for class edu.uct.ibr.gui.IBRMainPanel

IBRObservationPanel - Class in edu.uct.ibr.gui

IBRObservationPanel() - Constructor for class edu.uct.ibr.gui.IBRObservationPanel

IBRObservationPanel(BNGraph) - Constructor for class edu.uct.ibr.gui.IBRObservationPanel

Implication - Class in edu.uct.ibr.implication

Implication(BNNode, BNNode, BNGraph) - Constructor for class edu.uct.ibr.implication.Implication

ImplicationUtil - Class in edu.uct.ibr.util

ImplicationUtil() - Constructor for class edu.uct.ibr.util.ImplicationUtil

implPanel - Variable in class edu.uct.ibr.gui.IBRMainPanel

implToSentence(Implication) - Static method in class edu.uct.ibr.util.Entailment

Convert an implication statement into an AIMA.ComplexSentence

input() - Static method in class edu.uct.ibr.util.io

Get lower case String input

input(String) - Static method in class edu.uct.ibr.util.io

Get lower case String input from a user after printing out a user prompt

INPUT_ANTECEDENT_NODE_NAME - Static variable in class edu.uct.ibr.util.message

INPUT_CONSEQUENT_NODE_NAME - Static variable in class edu.uct.ibr.util.message

INPUT_FILE_PATH - Static variable in class edu.uct.ibr.util.message

INPUT_IMPLICATION_TYPE - Static variable in class edu.uct.ibr.util.message

INPUT_NODE_NAME - Static variable in class edu.uct.ibr.util.message

INPUT_OBSERVED_VALUE - Static variable in class edu.uct.ibr.util.message

io - Class in edu.uct.ibr.util

io() - Constructor for class edu.uct.ibr.util.io

isObserved() - Method in class edu.uct.ibr.bayesnet.BNNode

check if this node has been observerd

K

kbToIBIF(ArrayList<Implication>) - Static method in class edu.uct.ibr.util.ibifFactory

creates the KB section for a .ibif file

L

LINE - Static variable in class edu.uct.ibr.util.message

load(String) - Method in class edu.uct.ibr.bayesnet.BNGraph

Load a file into this BNGraph

load(String) - Static method in class edu.uct.ibr.util.ibifFactory

load an IBN from the file path

M

main(String[]) - Static method in class edu.uct.ibr.gui.IBRGUI

main(String[]) - Static method in class edu.uct.ibr.IBR

menuText(String) - Static method in class edu.uct.ibr.util.message

Get the menu instruction text

message - Class in edu.uct.ibr.util

message() - Constructor for class edu.uct.ibr.util.message

N

nodeManager - Variable in class edu.uct.ibr.gui.IBRGraphPanel

NONE - edu.uct.ibr.bayesnet.BNNode.Relationship

normalState - Variable in class edu.uct.ibr.gui.IBRGraphPanel

O

observe(BNNode, String) - Method in class edu.uct.ibr.bayesnet.BNGraph

Make a probabilistic observation on a node in this network

observe(Implication) - Method in class edu.uct.ibr.bayesnet.BNGraph

Make a logical observation on this network

observe(String) - Method in class edu.uct.ibr.bayesnet.BNNode

Observe this node

obsPanel - Variable in class edu.uct.ibr.gui.IBRMainPanel

output(Object) - Static method in class edu.uct.ibr.util.io

Print an object toString to the console on a new line

output(ArrayList<String>) - Static method in class edu.uct.ibr.util.io

Print the contents of an array to the console with each element on a new line

OUTPUT_FILE_PATH - Static variable in class edu.uct.ibr.util.message

outputNoLine(Object) - Static method in class edu.uct.ibr.util.io

Print an object toString to the console without printing a new line

owner - Variable in class edu.uct.ibr.gui.IBRGraphPanel

P

PARENT - edu.uct.ibr.bayesnet.BNNode.Relationship

Q

queryBotNetwork(String, String, Hashtable<String, String>) - Method in class edu.uct.ibr.bayesnet.BNGraph

Make a query on a specific node and value given a set of observations

queryBotNetwork(Hashtable<String, String>) - Method in class edu.uct.ibr.bayesnet.BNGraph

Make a query on the bottom network given a set of observations

R

randomVarState - Variable in class edu.uct.ibr.gui.IBRGraphPanel

rawInput() - Static method in class edu.uct.ibr.util.io

get raw input from the user as a String

reloadImplications() - Method in class edu.uct.ibr.gui.IBRImplicationPanel

run() - Static method in class edu.uct.ibr.cli.IBRCLI

Run the IBR Command Line Interface

S

save(BNGraph, String) - Static method in class edu.uct.ibr.util.ibifFactory

Save a BNGraph to the output file

save(String) - Method in class edu.uct.ibr.bayesnet.BNGraph

Save this BNGraph to the outputFile.

SELF - edu.uct.ibr.bayesnet.BNNode.Relationship

setGraph(BNGraph) - Method in class edu.uct.ibr.gui.IBRGraphPanel

setGraph(BNGraph) - Method in class edu.uct.ibr.gui.IBRImplicationPanel

setGraph(BNGraph) - Method in class edu.uct.ibr.gui.IBRObservationPanel

supplementNetwork() - Method in class edu.uct.ibr.implication.ClassicalImplication

Supplement the network this implication is related to with this implication.

supplementNetwork() - Method in class edu.uct.ibr.implication.Implication

The supplement Network method must be defined

T

toString() - Method in class edu.uct.ibr.bayesnet.BNGraph

The output of this graph

toString() - Method in class edu.uct.ibr.bayesnet.BNNode

toString() - Method in class edu.uct.ibr.implication.ClassicalImplication

toString() - Method in class edu.uct.ibr.implication.Implication

toVerboseString() - Method in class edu.uct.ibr.bayesnet.BNNode

Get a verbose output string

U

updateObservations() - Method in class edu.uct.ibr.gui.IBRObservationPanel

utilityVarState - Variable in class edu.uct.ibr.gui.IBRGraphPanel

V

valueOf(String) - Static method in enum edu.uct.ibr.bayesnet.BNNode.Relationship

Returns the enum constant of this type with the specified name.

values() - Static method in enum edu.uct.ibr.bayesnet.BNNode.Relationship

Returns an array containing the constants of this enum type, in the order they are declared.

varPainterFactory - Variable in class edu.uct.ibr.gui.IBRGraphPanel

vGraph - Variable in class edu.uct.ibr.gui.IBRGraphPanel

W

waitCursor - Static variable in class edu.uct.ibr.gui.IBRGraphPanel

A B C D E F G H I K L M N O P Q R S T U V W